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Given how much we roll with Samus having a ton of self-loathing due to the deaths of so many loved ones by the time of Fusion... Let's do even more with that.
The SA-X is terrifying, and part of that comes from it being a soulless, unspeaking, automaton; Samus without any of the soul. But we also know the X can copy memories, and granted it's possible the X never got to access Samus' brain, and wouldn't have those as the SA-X.
But what if they still somehow did? We know there's more than one SA-X; About ten, Adam calculates. So maybe one of them is cold and unfeeling... But what if another is Samus' own self-loathing personified, externalized?
The X are clever; What if this SA-X voices all of Samus' doubts towards her. Tortures her psychologically to throw Samus off her game, because the X know that self-doubt can cause more intelligent creatures to underperform. What if we have an SA-X that asks aloud all the questions that Samus hates about herself; If she's such a hero, why are so many of her friends and family dead? Why does she destroy everything she touches?
This plays into Samus' self-destructive action in blowing up the BSL with herself aboard, because she's convinced herself she can't do anything right, so it doesn't matter if this doesn't actually eradicate the X on SR388. And then Adam, this computerized copy who is supposed to be cold logic, actually speaks through to Samus by acting more objective and reminding her; There are other ways to do this, and you don't need to die. And then he begins to rediscover himself.
And it's like a parallel because computer Adam is also a clone copying the memories and personality of an original, albeit a manmade, digital mimic. And Adam and the SA-X start off as cold and unfeeling, but then rediscover emotions; In the SA-X's case, they're cruel and ultimately meant more as a parroted echo of Samus' self-hatred, for an ulterior, practical motive of defeating the enemy at any cost. For Adam, it's him learning to live and love again, and save a friend from the fate he technically already went through, and can't truly come back from.
But yeah, imagine the SA-X constantly guilt-tripping Samus... Bringing up her parents, and then Gray Voice. Not to mention Rundas, Ghor, and Gandrayda. The Metroids, especially the Infant. Zebes. Adam Malkovich. Belittling, dismissing, undermining Samus' achievements, insisting those she did help and save, like the Luminoth or Old Bird, will follow suit eventually. She became Ridley when she eradicated the Ing, who just wanted to survive, and left only one baby Metroid alive.
It gaslights Samus, which adds to the paranoia of not knowing what to believe, what's real, with the X mimicking things and the Federation lying to Samus; Plus her projecting Adam onto what she believed was just a computer. She's really going through it, and for a while it's actually working in throwing Samus off of her game, and she already lost all her upgrades!
It's basically Samus fighting her inner demons; Not just this caricature of her as something that is only a weapon and destroyer, but her own feelings of inadequacy, the guilt, the loneliness, the tendency to push others away for fear of hurting them too. And the suicidal ideation. And eventually she conquers both of these takes on her that actually go hand in hand, and comes out stronger with her identity rediscovered and reclaimed, hence the removal of the helmet to reveal Samus within, and her Fusion suit resembling the classic Varia color scheme now.
Day 22: Stalk
Day 23: Savage
Day 24: Taunt
Day 25: Clone
Day 26: Haze
Day 27: Strike
Day 28: Vendetta
Day 1: Ridley
Day 2: Fiery
Day 3: Winged
Day 4: Pirate
Day 5: Mecha
Day 6: Fang
Day 7: Cunning
Day 1: Ridley
Day 2: Fiery
Day 3: Winged
Day 4: Pirate
Day 5: Mecha
Day 6: Fang
Day 7: Cunning